Publish in OALib Journal

ISSN: 2333-9721

APC: Only $99


Any time

2020 ( 19 )

2019 ( 138 )

2018 ( 173 )

2017 ( 168 )

Custom range...

Search Results: 1 - 10 of 131012 matches for " Csaba Vágv?lgyi "
All listed articles are free for downloading (OA Articles)
Page 1 /131012
Display every page Item
Chemical, Physical and Biological Approaches to Prevent Ochratoxin Induced Toxicoses in Humans and Animals
János Varga,Sándor Kocsubé,Zsanett Péteri,Csaba Vágvlgyi,Beáta Tóth
Toxins , 2010, DOI: 10.3390/toxins2071718
Abstract: Ochratoxins are polyketide derived fungal secondary metabolites with nephrotoxic, immunosuppressive, teratogenic, and carcinogenic properties. Ochratoxin-producing fungi may contaminate agricultural products in the field (preharvest spoilage), during storage (postharvest spoilage), or during processing. Ochratoxin contamination of foods and feeds poses a serious health hazard to animals and humans. Several strategies have been investigated for lowering the ochratoxin content in agricultural products. These strategies can be classified into three main categories: prevention of ochratoxin contamination, decontamination or detoxification of foods contaminated with ochratoxins, and inhibition of the absorption of consumed ochratoxins in the gastrointestinal tract. This paper gives an overview of the strategies that are promising with regard to lowering the ochratoxin burden of animals and humans.
In vitro interactions of Candida parapsilosis wild type and lipase deficient mutants with human monocyte derived dendritic cells
István Nagy, Kata Filkor, Tibor Németh, Zsuzsanna Hamari, Csaba Vágvlgyi, Attila Gácser
BMC Microbiology , 2011, DOI: 10.1186/1471-2180-11-122
Abstract: Monocyte-derived immature and mature dendritic cells (iDCs and mDCs, respectively) co-cultured with live wild type or lipase deficient C. parapsilosis strains were studied to determine the phagocytic capacity and killing efficiency of host cells. We determined that both iDCs and mDCs efficiently phagocytosed and killed C. parapsilosis, furthermore our results show that the phagocytic and fungicidal activities of both iDCs and mDCs are more potent for lipase deficient compared to wild type yeast cells. In addition, the lipase deficient C. parapsilosis cells induce higher gene expression and protein secretion of proinflammatory cytokines and chemokines in both DC types relative to the effect of co-culture with wild type yeast cells.Our results show that DCs are activated by exposure to C. parapsilosis, as shown by increased phagocytosis, killing and proinflammatory protein secretion. Moreover, these data strongly suggest that C. parapsilosis derived lipase has a protective role during yeast:DC interactions, since lipase production in wt yeast cells decreased the phagocytic capacity and killing efficiency of host cells and downregulated the expression of host effector molecules.Candida parapsilosis is an emerging human pathogen that is currently the second or third most commonly isolated Candida species from blood cultures worldwide [1-4]. C. parapsilosis typically is a commensal of human skin and is considered to be of low pathogenicity in the setting of intact host barriers. The species is notorious for its capacity to form biofilms on catheters and other implanted devices, for nosocomial spread by hand carriage, and for persistence in the hospital environment [1,3,5]. C. parapsilosis is of special concern in critically ill neonates, causing more than one quarter of all invasive fungal infections in low birth weight infants in the UK [6] and North America [7,8], and it is a leading cause of neonatal mortality. In low-birth weight neonates, mortality rates are similar
Re-Mind the Gap! Insertion – Deletion Data Reveal Neglected Phylogenetic Potential of the Nuclear Ribosomal Internal Transcribed Spacer (ITS) of Fungi
László G. Nagy, Sándor Kocsubé, Zoltán Csanádi, Gábor M. Kovács, Tamás Petkovits, Csaba Vágvlgyi, Tamás Papp
PLOS ONE , 2012, DOI: 10.1371/journal.pone.0049794
Abstract: Rapidly evolving, indel-rich phylogenetic markers play a pivotal role in our understanding of the relationships at multiple levels of the tree of life. There is extensive evidence that indels provide conserved phylogenetic signal, however, the range of phylogenetic depths for which gaps retain tree signal has not been investigated in detail. Here we address this question using the fungal internal transcribed spacer (ITS), which is central in many phylogenetic studies, molecular ecology, detection and identification of pathogenic and non-pathogenic species. ITS is repeatedly criticized for indel-induced alignment problems and the lack of phylogenetic resolution above species level, although these have not been critically investigated. In this study, we examined whether the inclusion of gap characters in the analyses shifts the phylogenetic utility of ITS alignments towards earlier divergences. By re-analyzing 115 published fungal ITS alignments, we found that indels are slightly more conserved than nucleotide substitutions, and when included in phylogenetic analyses, improved the resolution and branch support of phylogenies across an array of taxonomic ranges and extended the resolving power of ITS towards earlier nodes of phylogenetic trees. Our results reconcile previous contradicting evidence for the effects of data exclusion: in the case of more sophisticated indel placement, the exclusion of indel-rich regions from the analyses results in a loss of tree resolution, whereas in the case of simpler alignment methods, the exclusion of gapped sites improves it. Although the empirical datasets do not provide to measure alignment accuracy objectively, our results for the ITS region are consistent with previous simulations studies alignment algorithms. We suggest that sophisticated alignment algorithms and the inclusion of indels make the ITS region and potentially other rapidly evolving indel-rich loci valuable sources of phylogenetic information, which can be exploited at multiple taxonomic levels.
Lichtheimia Species Exhibit Differences in Virulence Potential
Volker U. Schwartze, Kerstin Hoffmann, Ildikó Nyilasi, Tamás Papp, Csaba Vágvlgyi, Sybren de Hoog, Kerstin Voigt, Ilse D. Jacobsen
PLOS ONE , 2012, DOI: 10.1371/journal.pone.0040908
Abstract: Although the number of mucormycosis cases has increased during the last decades, little is known about the pathogenic potential of most mucoralean fungi. Lichtheimia species represent the second and third most common cause of mucormycosis in Europe and worldwide, respectively. To date only three of the five species of the genus have been found to be involved in mucormycosis, namely L. corymbifera, L. ramosa and L. ornata. However, it is not clear whether the clinical situation reflects differences in virulence between the species of Lichtheimia or whether other factors are responsible. In this study the virulence of 46 strains of all five species of Lichtheimia was investigated in chicken embryos. Additionally, strains of the closest-related genus Dichotomocladium were tested. Full virulence was restricted to the clinically relevant species while all strains of L. hyalospora, L. sphaerocystis and Dichotomocladium species were attenuated. Although virulence differences were present in the clinically relevant species, no connection between origin (environmental vs clinical) or phylogenetic position within the species was observed. Physiological studies revealed no clear connection of stress resistance and carbon source utilization with the virulence of the strains. Slower growth at 37°C might explain low virulence of L. hyalospora, L. spaherocystis and Dichotomocladium; however, similarly slow growing strains of L. ornata were fully virulent. Thus, additional factors or a complex interplay of factors determines the virulence of strains. Our data suggest that the clinical situation in fact reflects different virulence potentials in the Lichtheimiaceae.
Data Partitions, Bayesian Analysis and Phylogeny of the Zygomycetous Fungal Family Mortierellaceae, Inferred from Nuclear Ribosomal DNA Sequences
Tamás Petkovits, László G. Nagy, Kerstin Hoffmann, Lysett Wagner, Ildikó Nyilasi, Thasso Griebel, Domenica Schnabelrauch, Heiko Vogel, Kerstin Voigt, Csaba Vágvlgyi, Tamás Papp
PLOS ONE , 2011, DOI: 10.1371/journal.pone.0027507
Abstract: Although the fungal order Mortierellales constitutes one of the largest classical groups of Zygomycota, its phylogeny is poorly understood and no modern taxonomic revision is currently available. In the present study, 90 type and reference strains were used to infer a comprehensive phylogeny of Mortierellales from the sequence data of the complete ITS region and the LSU and SSU genes with a special attention to the monophyly of the genus Mortierella. Out of 15 alternative partitioning strategies compared on the basis of Bayes factors, the one with the highest number of partitions was found optimal (with mixture models yielding the best likelihood and tree length values), implying a higher complexity of evolutionary patterns in the ribosomal genes than generally recognized. Modeling the ITS1, 5.8S, and ITS2, loci separately improved model fit significantly as compared to treating all as one and the same partition. Further, within-partition mixture models suggests that not only the SSU, LSU and ITS regions evolve under qualitatively and/or quantitatively different constraints, but that significant heterogeneity can be found within these loci also. The phylogenetic analysis indicated that the genus Mortierella is paraphyletic with respect to the genera Dissophora, Gamsiella and Lobosporangium and the resulting phylogeny contradict previous, morphology-based sectional classification of Mortierella. Based on tree structure and phenotypic traits, we recognize 12 major clades, for which we attempt to summarize phenotypic similarities. M. longicollis is closely related to the outgroup taxon Rhizopus oryzae, suggesting that it belongs to the Mucorales. Our results demonstrate that traits used in previous classifications of the Mortierellales are highly homoplastic and that the Mortierellales is in a need of a reclassification, where new, phylogenetically informative phenotypic traits should be identified, with molecular phylogenies playing a decisive role.
Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae
Annamária Tóth, Anton Hausknecht, Irmgard Krisai-Greilhuber, Tamás Papp, Csaba Vágvlgyi, László G. Nagy
PLOS ONE , 2013, DOI: 10.1371/journal.pone.0056143
Abstract: Reconciling traditional classifications, morphology, and the phylogenetic relationships of brown-spored agaric mushrooms has proven difficult in many groups, due to extensive convergence in morphological features. Here, we address the monophyly of the Bolbitiaceae, a family with over 700 described species and examine the higher-level relationships within the family using a newly constructed multilocus dataset (ITS, nrLSU rDNA and EF1-alpha). We tested whether the fast-evolving Internal Transcribed Spacer (ITS) sequences can be accurately aligned across the family, by comparing the outcome of two iterative alignment refining approaches (an automated and a manual) and various indel-treatment strategies. We used PRANK to align sequences in both cases. Our results suggest that – although PRANK successfully evades overmatching of gapped sites, referred previously to as alignment overmatching – it infers an unrealistically high number of indel events with natively generated guide-trees. This 'alignment undermatching' could be avoided by using more rigorous (e.g. ML) guide trees. The trees inferred in this study support the monophyly of the core Bolbitiaceae, with the exclusion of Panaeolus, Agrocybe, and some of the genera formerly placed in the family. Bolbitius and Conocybe were found monophyletic, however, Pholiotina and Galerella require redefinition. The phylogeny revealed that stipe coverage type is a poor predictor of phylogenetic relationships, indicating the need for a revision of the intrageneric relationships within Conocybe.
Characterization of Virulence Properties in the C. parapsilosis Sensu Lato Species
Tibor Németh, Adél Tóth, Judit Szenzenstein, Péter Horváth, Joshua D. Nosanchuk, Zsuzsanna Grózer, Renáta Tóth, Csaba Papp, Zsuzsanna Hamari, Csaba Vágvlgyi, Attila Gácser
PLOS ONE , 2013, DOI: 10.1371/journal.pone.0068704
Abstract: The C. parapsilosis sensu lato group involves three closely related species, C. parapsilosis sensu stricto, C. orthopsilosis and C. metapsilosis. Although their overall clinical importance is dramatically increasing, there are few studies regarding the virulence properties of the species of the psilosis complex. In this study, we tested 63 C. parapsilosis sensu stricto, 12 C. metapsilosis and 18 C. orthopsilosis isolates for the ability to produce extracellular proteases, secrete lipases and form pseudohyphae. Significant differences were noted between species, with the C. metapsilosis strains failing to secrete lipase or to produce pseudohyphae. Nine different clinical isolates each of C. parapsilosis sensu stricto, C. orthopsilosis and C. metapsilosis were co-cultured with immortalized murine or primary human macrophages. C. parapsilosis sensu stricto isolates showed a significantly higher resistance to killing by primary human macrophages compared to C. orthopsilosis and C. metapsilosis isolates. In contrast, the killing of isolates by J774.2 mouse macrophages did not differ significantly between species. However, C. parapsilosis sensu stricto isolates induced the most damage to murine and human macrophages, and C. metapsilosis strains were the least toxic. Furthermore, strains that produced lipase or pseudohyphae were most resistant to macrophage-mediated killing and produced the most cellular damage. Finally, we used 9 isolates of each of the C. parapsilosis sensus lato species to examine their impact on the survival of Galleria mellonella larvae. The mortality rate of G. mellonella larvae infected with C. metapsilosis isolates was significantly lower than those infected with C. parapsilosis sensu stricto or C. orthopsilosis strains. Taken together, our findings demonstrate that C. metapsilosis is indeed the least virulent member of the psilosis group, and also highlight the importance of pseudohyphae and secreted lipases during fungal-host interactions.
Keratitis caused by the recently described new species Aspergillus brasiliensis: two case reports
Palanisamy Manikandan, János Varga, Sándor Kocsubé, Rajaraman Revathi, Raghavan Anita, Ilona Dóczi, Tibor Németh, Venkatapathy Narendran, Csaba Vágvlgyi, Madhavan Bhaskar, Chockaiya Manoharan, Robert A Samson, László Kredics
Journal of Medical Case Reports , 2010, DOI: 10.1186/1752-1947-4-68
Abstract: A 49-year-old Indian Tamil woman agricultural worker came with pain and defective vision in the right eye for one month. Meanwhile, a 35-year-old Indian Tamil woman presented with a history of a corneal ulcer involving the left eye for 15 days. The fungal strains isolated from these two cases were originally suspected to belong to Aspergillus section Nigri based on macro- and micromorphological characteristics. Molecular identification revealed that both isolates represent A. brasiliensis.The two A. brasiliensis strains examined in this study were part of six keratitis isolates from Aspergillus section Nigri, suggesting that this recently described species may be responsible for a significant proportion of corneal infections caused by black Aspergilli. The presented cases also indicate that significant differences may occur between the severities of keratitis caused by individual isolates of A. brasiliensis.Certain Aspergillus species, mainly A. flavus, A. terreus, A. fumigatus and A. niger have long been regarded as important pathogens in eye infections, especially keratitis [1]. Other members of the genus less frequently occurring in keratitis include A. glaucus, A. ochraceus and A. tamarii [1,2]. The identification at the species level of Aspergillus strains causing keratomycosis would be of great importance since the pathogenic potential and antifungal susceptibilities may substantially vary between different species of the genus. Herein we report the first two known cases of fungal keratitis caused by the recently described species A. brasiliensis.A 49-year-old, Indian Tamil woman agricultural worker came with pain and defective vision in the right eye for one month. The symptoms started after she was exposed to paddy husk. At the time of presentation she was using 5% topical natamycin and gatifloxacin eye drops prescribed by her ophthalmologist. She had no significant past ophthalmic history or medical history. On examination, the visual acuity in her right ey
Relations between invasion percolation and critical percolation in two dimensions
Michael Damron,Art?m Sapozhnikov,Bálint Vágvlgyi
Mathematics , 2008, DOI: 10.1214/09-AOP462
Abstract: We study invasion percolation in two dimensions. We compare connectivity properties of the origin's invaded region to those of (a) the critical percolation cluster of the origin and (b) the incipient infinite cluster. To exhibit similarities, we show that for any $k\geq1$, the $k$-point function of the first so-called pond has the same asymptotic behavior as the probability that $k$ points are in the critical cluster of the origin. More prominent, though, are the differences. We show that there are infinitely many ponds that contain many large disjoint $p_c$-open clusters. Further, for $k>1$, we compute the exact decay rate of the distribution of the radius of the $k$th pond and see that it differs from that of the radius of the critical cluster of the origin. We finish by showing that the invasion percolation measure and the incipient infinite cluster measure are mutually singular.
The size of a pond in 2D invasion percolation
Jacob van den Berg,Antal A. Járai,Bálint Vágvlgyi
Mathematics , 2007,
Abstract: We consider invasion percolation on the square lattice. It has been proved by van den Berg, Peres, Sidoravicius and Vares, that the probability that the radius of a so-called pond is larger than n, differs at most a factor of order log n from the probability that in critical Bernoulli percolation the radius of an open cluster is larger than n. We show that these two probabilities are, in fact, of the same order. Moreover, we prove an analogous result for the volume of a pond.
Page 1 /131012
Display every page Item

Copyright © 2008-2017 Open Access Library. All rights reserved.