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A two-way regularization method for MEG source reconstruction  [PDF]
Tian Siva Tian,Jianhua Z. Huang,Haipeng Shen,Zhimin Li
Statistics , 2012, DOI: 10.1214/11-AOAS531
Abstract: The MEG inverse problem refers to the reconstruction of the neural activity of the brain from magnetoencephalography (MEG) measurements. We propose a two-way regularization (TWR) method to solve the MEG inverse problem under the assumptions that only a small number of locations in space are responsible for the measured signals (focality), and each source time course is smooth in time (smoothness). The focality and smoothness of the reconstructed signals are ensured respectively by imposing a sparsity-inducing penalty and a roughness penalty in the data fitting criterion. A two-stage algorithm is developed for fast computation, where a raw estimate of the source time course is obtained in the first stage and then refined in the second stage by the two-way regularization. The proposed method is shown to be effective on both synthetic and real-world examples.
MEG/EEG Source Reconstruction, Statistical Evaluation, and Visualization with NUTMEG  [PDF]
Sarang S. Dalal,Johanna M. Zumer,Adrian G. Guggisberg,Michael Trumpis,Daniel D. E. Wong,Kensuke Sekihara,Srikantan S. Nagarajan
Computational Intelligence and Neuroscience , 2011, DOI: 10.1155/2011/758973
Abstract: NUTMEG is a source analysis toolbox geared towards cognitive neuroscience researchers using MEG and EEG, including intracranial recordings. Evoked and unaveraged data can be imported to the toolbox for source analysis in either the time or time-frequency domains. NUTMEG offers several variants of adaptive beamformers, probabilistic reconstruction algorithms, as well as minimum-norm techniques to generate functional maps of spatiotemporal neural source activity. Lead fields can be calculated from single and overlapping sphere head models or imported from other software. Group averages and statistics can be calculated as well. In addition to data analysis tools, NUTMEG provides a unique and intuitive graphical interface for visualization of results. Source analyses can be superimposed onto a structural MRI or headshape to provide a convenient visual correspondence to anatomy. These results can also be navigated interactively, with the spatial maps and source time series or spectrogram linked accordingly. Animations can be generated to view the evolution of neural activity over time. NUTMEG can also display brain renderings and perform spatial normalization of functional maps using SPM's engine. As a MATLAB package, the end user may easily link with other toolboxes or add customized functions. 1. Introduction As exemplified by this special issue on open-source analysis toolboxes, many software solutions exist to suit a variety of experimental goals and level of end-user programming experience, including the option to mix and match toolboxes for different stages of processing. However, a decade ago, few options existed for analyzing magnetoencephalography (MEG) data with noncommercial open-source software, especially for more sophisticated inverse algorithms or with a graphical interface to navigate results. Electroencephalography (EEG) analysis and corresponding software packages are dominated by sensor level processing, such as topography, evoked responses, and ICA. Source localization is more feasible with MEG data; however, many commercial packages offer only one of several basic inverse methods (dipole fitting, beamforming, and minimum-norm). Within open-source options available at present, BrainStorm (http://neuroimage.usc.edu/brainstorm) and MNESuite (http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofMNE.php) offer similar source localization options; FieldTrip (http://fieldtrip.fcdonders.nl/) additionally offers beamforming, and SPM8 (http://www.fil.ion.ucl.ac.uk/spm/) offers an advanced Bayesian source estimation method. However, to date,
Localization of MEG human brain responses to retinotopic visual stimuli with contrasting source reconstruction approaches  [PDF]
Nela Cicmil,Holly Bridge,Andrew J. Parker,Mark W. Woolrich,Kristine Krug
Frontiers in Neuroscience , 2014, DOI: 10.3389/fnins.2014.00127
Abstract: Magnetoencephalography (MEG) allows the physiological recording of human brain activity at high temporal resolution. However, spatial localization of the source of the MEG signal is an ill-posed problem as the signal alone cannot constrain a unique solution and additional prior assumptions must be enforced. An adequate source reconstruction method for investigating the human visual system should place the sources of early visual activity in known locations in the occipital cortex. We localized sources of retinotopic MEG signals from the human brain with contrasting reconstruction approaches (minimum norm, multiple sparse priors, and beamformer) and compared these to the visual retinotopic map obtained with fMRI in the same individuals. When reconstructing brain responses to visual stimuli that differed by angular position, we found reliable localization to the appropriate retinotopic visual field quadrant by a minimum norm approach and by beamforming. Retinotopic map eccentricity in accordance with the fMRI map could not consistently be localized using an annular stimulus with any reconstruction method, but confining eccentricity stimuli to one visual field quadrant resulted in significant improvement with the minimum norm. These results inform the application of source analysis approaches for future MEG studies of the visual system, and indicate some current limits on localization accuracy of MEG signals.
Source Reconstruction Accuracy of MEG and EEG Bayesian Inversion Approaches  [PDF]
Paolo Belardinelli, Erick Ortiz, Gareth Barnes, Uta Noppeney, Hubert Preissl
PLOS ONE , 2012, DOI: 10.1371/journal.pone.0051985
Abstract: Electro- and magnetoencephalography allow for non-invasive investigation of human brain activation and corresponding networks with high temporal resolution. Still, no correct network detection is possible without reliable source localization. In this paper, we examine four different source localization schemes under a common Variational Bayesian framework. A Bayesian approach to the Minimum Norm Model (MNM), an Empirical Bayesian Beamformer (EBB) and two iterative Bayesian schemes (Automatic Relevance Determination (ARD) and Greedy Search (GS)) are quantitatively compared. While EBB and MNM each use a single empirical prior, ARD and GS employ a library of anatomical priors that define possible source configurations. The localization performance was investigated as a function of (i) the number of sources (one vs. two vs. three), (ii) the signal to noise ratio (SNR; 5 levels) and (iii) the temporal correlation of source time courses (for the cases of two or three sources). We also tested whether the use of additional bilateral priors specifying source covariance for ARD and GS algorithms improved performance. Our results show that MNM proves effective only with single source configurations. EBB shows a spatial accuracy of few millimeters with high SNRs and low correlation between sources. In contrast, ARD and GS are more robust to noise and less affected by temporal correlations between sources. However, the spatial accuracy of ARD and GS is generally limited to the order of one centimeter. We found that the use of correlated covariance priors made no difference to ARD/GS performance.
Harmony: EEG/MEG Linear Inverse Source Reconstruction in the Anatomical Basis of Spherical Harmonics  [PDF]
Yury Petrov
PLOS ONE , 2012, DOI: 10.1371/journal.pone.0044439
Abstract: EEG/MEG source localization based on a “distributed solution” is severely underdetermined, because the number of sources is much larger than the number of measurements. In particular, this makes the solution strongly affected by sensor noise. A new way to constrain the problem is presented. By using the anatomical basis of spherical harmonics (or spherical splines) instead of single dipoles the dimensionality of the inverse solution is greatly reduced without sacrificing the quality of the data fit. The smoothness of the resulting solution reduces the surface bias and scatter of the sources (incoherency) compared to the popular minimum-norm algorithms where single-dipole basis is used (MNE, depth-weighted MNE, dSPM, sLORETA, LORETA, IBF) and allows to efficiently reduce the effect of sensor noise. This approach, termed Harmony, performed well when applied to experimental data (two exemplars of early evoked potentials) and showed better localization precision and solution coherence than the other tested algorithms when applied to realistically simulated data.
Beamformer Source Analysis and Connectivity on Concurrent EEG and MEG Data during Voluntary Movements  [PDF]
Muthuraman Muthuraman, Helge Hellriegel, Nienke Hoogenboom, Abdul Rauf Anwar, Kidist Gebremariam Mideksa, Holger Krause, Alfons Schnitzler, Günther Deuschl, Jan Raethjen
PLOS ONE , 2014, DOI: 10.1371/journal.pone.0091441
Abstract: Electroencephalography (EEG) and magnetoencephalography (MEG) are the two modalities for measuring neuronal dynamics at a millisecond temporal resolution. Different source analysis methods, to locate the dipoles in the brain from which these dynamics originate, have been readily applied to both modalities alone. However, direct comparisons and possible advantages of combining both modalities have rarely been assessed during voluntary movements using coherent source analysis. In the present study, the cortical and sub-cortical network of coherent sources at the finger tapping task frequency (2–4 Hz) and the modes of interaction within this network were analysed in 15 healthy subjects using a beamformer approach called the dynamic imaging of coherent sources (DICS) with subsequent source signal reconstruction and renormalized partial directed coherence analysis (RPDC). MEG and EEG data were recorded simultaneously allowing the comparison of each of the modalities separately to that of the combined approach. We found the identified network of coherent sources for the finger tapping task as described in earlier studies when using only the MEG or combined MEG+EEG whereas the EEG data alone failed to detect single sub-cortical sources. The signal-to-noise ratio (SNR) level of the coherent rhythmic activity at the tapping frequency in MEG and combined MEG+EEG data was significantly higher than EEG alone. The functional connectivity analysis revealed that the combined approach had more active connections compared to either of the modalities during the finger tapping (FT) task. These results indicate that MEG is superior in the detection of deep coherent sources and that the SNR seems to be more vital than the sensitivity to theoretical dipole orientation and the volume conduction effect in the case of EEG.
Combining EEG and MEG for the Reconstruction of Epileptic Activity Using a Calibrated Realistic Volume Conductor Model  [PDF]
ümit Aydin, Johannes Vorwerk, Philipp Küpper, Marcel Heers, Harald Kugel, Andreas Galka, Laith Hamid, J?rg Wellmer, Christoph Kellinghaus, Stefan Rampp, Carsten Hermann Wolters
PLOS ONE , 2014, DOI: 10.1371/journal.pone.0093154
Abstract: To increase the reliability for the non-invasive determination of the irritative zone in presurgical epilepsy diagnosis, we introduce here a new experimental and methodological source analysis pipeline that combines the complementary information in EEG and MEG, and apply it to data from a patient, suffering from refractory focal epilepsy. Skull conductivity parameters in a six compartment finite element head model with brain anisotropy, constructed from individual MRI data, are estimated in a calibration procedure using somatosensory evoked potential (SEP) and field (SEF) data. These data are measured in a single run before acquisition of further runs of spontaneous epileptic activity. Our results show that even for single interictal spikes, volume conduction effects dominate over noise and need to be taken into account for accurate source analysis. While cerebrospinal fluid and brain anisotropy influence both modalities, only EEG is sensitive to skull conductivity and conductivity calibration significantly reduces the difference in especially depth localization of both modalities, emphasizing its importance for combining EEG and MEG source analysis. On the other hand, localization differences which are due to the distinct sensitivity profiles of EEG and MEG persist. In case of a moderate error in skull conductivity, combined source analysis results can still profit from the different sensitivity profiles of EEG and MEG to accurately determine location, orientation and strength of the underlying sources. On the other side, significant errors in skull modeling are reflected in EEG reconstruction errors and could reduce the goodness of fit to combined datasets. For combined EEG and MEG source analysis, we therefore recommend calibrating skull conductivity using additionally acquired SEP/SEF data.
FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data  [PDF]
Robert Oostenveld,Pascal Fries,Eric Maris,Jan-Mathijs Schoffelen
Computational Intelligence and Neuroscience , 2011, DOI: 10.1155/2011/156869
Abstract: This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages.
Difficulties applying recent blind source separation techniques to EEG and MEG  [PDF]
Kevin H. Knuth
Statistics , 2015,
Abstract: High temporal resolution measurements of human brain activity can be performed by recording the electric potentials on the scalp surface (electroencephalography, EEG), or by recording the magnetic fields near the surface of the head (magnetoencephalography, MEG). The analysis of the data is problematic due to the fact that multiple neural generators may be simultaneously active and the potentials and magnetic fields from these sources are superimposed on the detectors. It is highly desirable to un-mix the data into signals representing the behaviors of the original individual generators. This general problem is called blind source separation and several recent techniques utilizing maximum entropy, minimum mutual information, and maximum likelihood estimation have been applied. These techniques have had much success in separating signals such as natural sounds or speech, but appear to be ineffective when applied to EEG or MEG signals. Many of these techniques implicitly assume that the source distributions have a large kurtosis, whereas an analysis of EEG/MEG signals reveals that the distributions are multimodal. This suggests that more effective separation techniques could be designed for EEG and MEG signals.
EEG/MEG Source Imaging: Methods, Challenges, and Open Issues  [PDF]
Katrina Wendel,Outi V is nen,Jaakko Malmivuo,Nevzat G. Gencer,Bart Vanrumste,Piotr Durka,Ratko Magjarevi ,Selma Supek,Mihail Lucian Pascu,Hugues Fontenelle,Rolando Grave de Peralta Menendez
Computational Intelligence and Neuroscience , 2009, DOI: 10.1155/2009/656092
Abstract: We present the four key areas of research—preprocessing, the volume conductor, the forward problem, and the inverse problem—that affect the performance of EEG and MEG source imaging. In each key area we identify prominent approaches and methodologies that have open issues warranting further investigation within the community, challenges associated with certain techniques, and algorithms necessitating clarification of their implications. More than providing definitive answers we aim to identify important open issues in the quest of source localization.
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