Background: Obesity and sedentary lifestyle are growing problem. The global community's concern is to find the best strategy to obtain a more efficient process of weight reduction, increase physical activity, and minimize weight regain level. The purpose of this study was to evaluate the long-term effects of a short-term intervention on weight changes.Methods: The present study is a one-year follow-up study of a 12-week intervention during which the 15 individuals in the intermittent group performed 40 minutes exercise in three bouts per day; however, the 15 participants of the continuous group did the same but 40 minutes continuously. The 15 participants in the control group had no exercise prescription. After one year, weight changes, body fat percentage, and BMI were re-evaluated in the groups.Results: After adjusting the baseline weight, patterns of change in the mean weights from the end of the third month to the twelfth month were different across groups (P=0.02). After significant weight loss in the intermittent group, the mean weight in this group increased by 2.32 kilograms during the period, although not statistically significant. No increase was observed in the control group’s mean weight (P=1.00). In the continuous group, the mean weight increased statistically (P=0.048, 3.63 kilograms).Conclusion: It seems that long-term effects of moderate intensity intermittent aerobic exercise in overweight and obese women on weight control are more efficient than those of continuous exercise. However, for a change in lifestyle and prevention of weight regain, longer follow-ups are required.